euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

29 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip8442 chr10 25707688 25707688 - L1-Ta germline . no 613 GPR158
srip10545 chr10 91717633 91717633 - L1-Ta germline validated no 613 .
srip11844 chr10 124455228 124455228 + L1-Ta germline . no 613 .
srip18053 chr11 110377885 110377885 - L1-Ta germline . no 613 .
srip19291 chr11 134305648 134305648 - L1-Ta germline validated no 613 .
srip25151 chr12 96912553 96912553 - L1-Ta germline . no 613 C12orf55
srip25538 chr12 117814443 117814443 - L1-Ta germline validated no 613 .
srip26498 chr12 126803020 126803020 - L1-Ta germline . no 613 .
srip37350 chr14 59220402 59220402 + L1-Ta germline . no 613 .
srip40123 chr15 47507326 47507326 - L1-Ta germline . no 613 SEMA6D
srip44090 chr16 17755307 17755307 - L1-Ta germline . no 613 .
srip46411 chr16 76865792 76865792 - L1-Ta germline . no 613 .
srip58227 chr2 141852913 141852913 - L1-Ta germline . no 613 LRP1B
srip61139 chr2 199779916 199779916 + L1-Ta germline . no 613 .
srip65873 chr21 19517306 19517306 - L1-Ta germline . no 613 .
srip66176 chr21 23626190 23626190 - L1-Ta germline . no 613 .
srip72728 chr3 55788580 55788580 + L1-Ta germline validated no 613 ERC2
srip73434 chr3 59852905 59852905 + L1-Ta germline validated no 613 FHIT
srip78577 chr3 151148542 151148542 - L1-Ta germline validated no 613 MED12L
srip82142 chr3 193354185 193354185 - L1-Ta germline validated no 613 OPA1
srip96367 chr5 11391277 11391277 + L1-Ta germline validated no 613 CTNND2
srip100797 chr5 89450784 89450784 + L1-Ta germline validated no 613 .
srip106090 chr5 173567819 173567819 - L1-Ta germline . no 613 .
srip116377 chr7 17094715 17094715 + L1-Ta germline . no 613 .
srip117015 chr7 42529866 42529866 - L1-Ta germline . no 613 .
srip121808 chr7 107829265 107829265 + L1-Ta germline . no 613 NRCAM
srip122121 chr7 110484745 110484745 + L1-Ta germline . no 613 IMMP2L
srip124092 chr8 4452925 4452925 - L1-Ta germline . no 613 CSMD1
srip140768 chrX 119892834 119892834 - L1-Ta germline . no 613 .